Studies
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56,036 |
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Biosamples
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191,586 |
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Sequencing Projects
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515,941 |
|
Analysis Projects
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381,622 |
| Organisms | 480,438 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0441687
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Project Name
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Natrinema thermotolerans A29
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Natrinema thermotolerans A29 | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA482292 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN09702595 |
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Source Sample ID
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| PI | Unknown | ||||||||||||||||||
| Added By | JGI automated process on 2019-08-14 | ||||||||||||||||||
| Last Modified By | Supratim Mukherjee on 2023-02-11 | ||||||||||||||||||
| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Sequencing Center
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Wuhan University
(China)
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Collaborating Institute
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Funding Agency
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Project Description
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Haloterrigena jeotgali A29 genome sequencing
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Nature communications: 10(1):1688 A new type of DNA phosphorothioation-based antiviral system in archaea. PubMed: 30975999 DOI: 10.1038/s41467-019-09390-9 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Haloterrigena jeotgali A29 genome sequencing |
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| Organism |
Natrinema thermotolerans A29 |
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| Analysis Projects |
Haloterrigena jeotgali A29 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio RS II |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0086822 |
| Organism Name |
Natrinema thermotolerans A29
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| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
ARCHAEAL
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| Phylogeny |
EURYARCHAEOTA-HALOBACTERIA
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| Genus |
Natrinema
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| Genus Synonyms |
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| Species |
Natrinema thermotolerans
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| Subspecies |
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| Species Synonyms |
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| Strain |
A29
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| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 18794
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.14600
|
| Exemplar Name |
Haloterrigena jeotgali
|
| Taxon DOI |
10.1601/tx.14600
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1455609 |
| NCBI Superkingdom |
Archaea
|
| NCBI Kingdom |
|
| NCBI Phylum |
Euryarchaeota
|
| NCBI Class |
Halobacteria
|
| NCBI Order |
Natrialbales
|
| NCBI Family |
Natrialbaceae
|
| NCBI Genus |
Natrinema
|
| NCBI Species |
Natrinema thermotolerans
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Food production
|
| Ecosystem Type |
Fermented seafood
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
EF077633 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
Rod-shaped
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| Motility |
Nonmotile
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| Sporulation |
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| Temperature Range |
Mesophile
|
| Salinity |
Halotolerant
|
| pH |
7
|
| Cell Diameter |
0.4 μm
|
| Cell Length |
1.0 μm
|
| Color |
Red
|
| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Irregular colonies |
| Diseases |
|
| Known Habitats |
Fermented food product |
| Metabolisms |
|
| Phenotypes |
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| Energy Sources |
|
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