PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0441687
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Project Name
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Natrinema thermotolerans A29
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Natrinema thermotolerans A29 | ||||||||||||||||||
NCBI BioProject Accession
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PRJNA482292 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN09702595 |
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Source Sample ID
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PI | Unknown | ||||||||||||||||||
Added By | JGI automated process on 2019-08-14 | ||||||||||||||||||
Last Modified By | Supratim Mukherjee on 2023-02-11 | ||||||||||||||||||
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Sequencing Center
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Wuhan University
(China)
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Collaborating Institute
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Funding Agency
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Project Description
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Haloterrigena jeotgali A29 genome sequencing
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Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||
Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |||||||||||||||||||
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Nature communications: 10(1):1688 A new type of DNA phosphorothioation-based antiviral system in archaea. PubMed: 30975999 DOI: 10.1038/s41467-019-09390-9 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||
Study |
Haloterrigena jeotgali A29 genome sequencing |
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Organism |
Natrinema thermotolerans A29 |
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Analysis Projects |
Haloterrigena jeotgali A29 |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio RS II |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0086822 |
Organism Name |
Natrinema thermotolerans A29
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
ARCHAEAL
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Phylogeny |
EURYARCHAEOTA-HALOBACTERIA
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Genus |
Natrinema
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Genus Synonyms |
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Species |
Natrinema thermotolerans
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Subspecies |
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Species Synonyms |
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Strain |
A29
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
DSM 18794
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.14600
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Exemplar Name |
Haloterrigena jeotgali
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Taxon DOI |
10.1601/tx.14600
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Biosafety Level |
1
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
1455609 |
NCBI Superkingdom |
Archaea
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NCBI Kingdom |
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NCBI Phylum |
Euryarchaeota
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NCBI Class |
Halobacteria
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NCBI Order |
Natrialbales
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NCBI Family |
Natrialbaceae
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NCBI Genus |
Natrinema
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NCBI Species |
Natrinema thermotolerans
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ISOLATION CLASSIFICATION | |
Ecosystem |
Engineered
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Ecosystem Category |
Food production
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Ecosystem Type |
Fermented seafood
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Ecosystem Subtype |
Unclassified
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Specific Ecosystem |
Unclassified
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
EF077633 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
Rod-shaped
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Motility |
Nonmotile
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Sporulation |
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Temperature Range |
Mesophile
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Salinity |
Halotolerant
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pH |
7
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Cell Diameter |
0.4 μm
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Cell Length |
1.0 μm
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Color |
Red
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Gram Staining |
Gram-
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
Irregular colonies |
Diseases |
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Known Habitats |
Fermented food product |
Metabolisms |
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Phenotypes |
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Energy Sources |
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