Studies
|
56,334 |
|
Biosamples
|
196,920 |
|
Sequencing Projects
|
525,292 |
|
Analysis Projects
|
385,429 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0440926
|
|
Project Name
|
Chitinophaga sp. OAE865
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Chitinophaga sp. OAE865 |
|
NCBI BioProject Accession
|
PRJNA712273 |
|
NCBI Locus Tag
|
J3E60
|
|
NCBI BioSample Accession
|
SAMN18261501 |
|
Source Sample ID
|
|
| PI | Trent Northen |
| Added By | JGI automated process on 2019-08-09 |
| Last Modified By | JGI automated process on 2023-05-04 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
|
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Sequencing of active microbes from soil rhizosphere to develop a model microbiome
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
Unrestricted
|
|
JGI Award DOI
|
10.46936/10.25585/60001258 |
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
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Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States |
| Organism |
Chitinophaga sp. OAE865 |
| Analysis Projects |
Chitinophaga sp. OAE865 (Illumina draft) |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina NovaSeq S4 |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0516933 |
| Organism Name |
Chitinophaga sp. OAE865
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
BACTEROIDOTA
|
| Genus |
Chitinophaga
|
| Genus Synonyms |
|
| Species |
Chitinophaga sp. OAE865
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
OAE865
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2817898 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Bacteroidota
|
| NCBI Class |
Chitinophagia
|
| NCBI Order |
Chitinophagales
|
| NCBI Family |
Chitinophagaceae
|
| NCBI Genus |
Chitinophaga
|
| NCBI Species |
Chitinophaga sp. OAE865
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Soil
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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