PROJECT INFORMATION
GOLD Project ID
Gp0440416  
Project Name
Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Nitrogen_A SG_5  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Nitrogen_A SG_5
NCBI BioProject Accession PRJNA712347
NCBI Locus Tag
J3F06  
NCBI BioSample Accession SAMN18259830
PI Trent Northen
Added By JGI automated process on 2019-08-09
Last Modified By JGI automated process on 2022-09-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001258
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States
Biosample Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Nitrogen_A SG_5
Analysis Projects Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Nitrogen_A SG_5
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Nitrogen_A SG_5
Other Names (alias, synonyms, short names)
  
Sample Description
Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Artificial ecosystem  
Ecosystem Type
Plant growth chamber  
Ecosystem Subtype
Soil  
Specific Ecosystem
  

 

 

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