PROJECT INFORMATION
GOLD Project ID
Gp0440401  
Project Name
Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics01_030518  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Steven Wilhelm
Added By JGI automated process on 2019-08-09
Last Modified By JGI automated process on 2019-11-19
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of seawater microbial communities from the Indian Ocean; untreated seawater  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Seawater microbial communities from the Antarctic Ocean
Biosample Seawater microbial communities from the Indian Ocean - Omics01_030518
Analysis Projects Environmental water column metatranscriptomes combined assembly
Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics01_030518 (Metagenome Metatranscriptome)
Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics01_030518 (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects 3
Number of DAPs
2  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Seawater microbial communities from the Indian Ocean - Omics01_030518
Other Names (alias, synonyms, short names)
  
Sample Description
Seawater microbial communities from the Indian Ocean; untreated seawater  
SAMPLE TAXONOMY
NCBI Taxonomy ID 408172
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
  

 

 

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