PROJECT INFORMATION
GOLD Project ID
Gp0439007  
Project Name
Sphingobium fuliginis ATCC 27551  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sphingobium fuliginis ATCC 27551 genome sequencing
NCBI BioProject ID 548252
NCBI BioProject Accession PRJNA548252
NCBI Locus Tag
FIL70  
NCBI BioSample Accession SAMN12012140
PI S. Dayananda
Added By Supratim Mukherjee on 2019-07-31
Last Modified By JGI automated process on 2019-07-31
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center University of Hyderabad (India)
Collaborating Institute
  
Funding Agency
  
Project Description
Whole genome sequence of Sphingobium fuliginis ATCC 27551 to unravel its degradative potential for xenobiotic compounds and adaptability to harsh environments  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications The Journal of general and applied microbiology 56(3):249-55 Reclassification of a parathione-degrading Flavobacterium sp. ATCC 27551 as Sphingobium fuliginis.

SRA Experiment
 
SRA Experiment Id SRX6071127
Experiment Title Whole genome sequence of Sphingobium fuliginis ATCC 27551
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name SO_3082
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX6037166
Experiment Title Whole genome sequencing of Sphingobium fuliginis ATCC 27551
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RT-PCR
Library Name m161016_051133_42146_c101100632550000001823258204261763
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Sphingobium fuliginis ATCC 27551 genome sequencing
Organism Sphingobium fuliginis ATCC 27551
Analysis Projects Sphingobium fuliginis ATCC 27551
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0516737
Organism Name
Sphingobium fuliginis ATCC 27551  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Sphingobium  
Genus Synonyms
  
Species
Sphingobium fuliginis  
Subspecies
  
Species Synonyms
  
Strain
ATCC 27551  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 27551  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1208342
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Sphingobium  
NCBI Species
Sphingobium fuliginis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Agricultural  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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