PROJECT INFORMATION
GOLD Project ID
Gp0437803  
Project Name
Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4)  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4)
NCBI BioProject ID 654275
NCBI BioProject Accession PRJNA654275
NCBI Locus Tag
H4190  
NCBI BioSample Accession SAMN15740717
PI Ramunas Stepanauskas
Added By JGI automated process on 2019-07-22
Last Modified By Jagadish Sundaramurthi on 2020-08-10
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Hot spring water microbial communities from California, United States  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX9167300  (Link to NCBI )
Experiment Title MOS_S4_MG
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name GPYGY
Library Layout PAIRED
PROJECT COMPOSITION
Study Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II)
Biosample Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4)
Analysis Projects Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4)
Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4)
Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4)
Number of Analysis Projects (AP) 3
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4)
Other Names (alias, synonyms, short names)
  
Sample Description
Desert spring benthic microbial communities from California, United States  
SAMPLE TAXONOMY
NCBI Taxonomy ID 449393
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Desert springs  
Specific Ecosystem
Benthic  

 

 

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