PROJECT INFORMATION
GOLD Project ID
Gp0404871  
Project Name
Salinibacter ruber SP3007  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI William Whitman
Added By JGI automated process on 2019-04-29
Last Modified By JGI automated process on 2019-08-21
Project Comments
  
Project Status
targeted  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing of Salinibacter ruber strain as part of the Genomic Encyclopedia of Type Strains, Phase IV project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome sequencing to study the core and pangenomes of soil and plant-associated prokaryotes
Organism Salinibacter ruber SP3007
Analysis Projects Salinibacter ruber SP3007
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Awaiting Sample
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0512805
Organism Name
Salinibacter ruber SP3007  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Salinibacter  
Genus Synonyms
  
Species
Salinibacter ruber  
Subspecies
  
Species Synonyms
  
Strain
SP3007  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 761659
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
  
NCBI Order
Bacteroidetes Order II. Incertae sedis  
NCBI Family
Rhodothermaceae  
NCBI Genus
Salinibacter  
NCBI Species
Salinibacter ruber  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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