PROJECT INFORMATION
GOLD Project ID
Gp0404331  
Project Name
Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO5  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession PRJNA563685
NCBI Locus Tag
  
NCBI BioSample Accession SAMN18064496
PI Magdalena Osburn
Added By Caitlin Casar on 2019-04-24
Last Modified By Supratim Mukherjee on 2021-08-16
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Argonne National Laboratory (USA)
Collaborating Institute
  
Funding Agency National Aeronautics and Space Administration (NASA) (USA)
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA
Biosample Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO5
Analysis Projects Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO5
Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO5 v2
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 4: Annotation Directed
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO5
Other Names (alias, synonyms, short names)
  
Sample Description
Total microbial DNA extracted from 10L of subsurface water collected 4850 feet below surface.  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1564682
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Deep subsurface  
Ecosystem Subtype
Aquifer  
Specific Ecosystem
  

 

 

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