PROJECT INFORMATION
GOLD Project ID
Gp0404141  
Project Name
Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J9  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J9
NCBI BioProject Accession PRJNA566551
NCBI Locus Tag
F4348  
NCBI BioSample Accession SAMN12793273
PI Roland Hatzenpichler
Added By JGI automated process on 2019-04-23
Last Modified By JGI automated process on 2022-09-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States; Pseudomonas putida 100 cell sort  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome - Cell Enrichment  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60001107
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States
Biosample Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J9
Analysis Projects Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J9
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NextSeq-HO
Library Method (MIGS-28)
Illumina Nextera with Size Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J9
Other Names (alias, synonyms, short names)
  
Sample Description
Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States; Pseudomonas putida 100 cell sort  
SAMPLE TAXONOMY
NCBI Taxonomy ID 412755
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Wetlands  
Specific Ecosystem
Sediment  

 

 

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