PROJECT INFORMATION
GOLD Project ID
Gp0403973  
Project Name
Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep2
NCBI BioProject ID 620828
NCBI BioProject Accession PRJNA620828
NCBI Locus Tag
HD203  
NCBI BioSample Accession SAMN14510744
PI Willm Martens-Habbena
Added By JGI automated process on 2019-04-18
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Soil microbial communities from Everglades Agricultural Area, Florida, United States; soil from rotation with Sugarcane-Sweetcorn-Rice-sugarcane  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX8181610  (Link to NCBI )
Experiment Title EAA2017_Dec_plot3_rep2 metagenome
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name GOHHX
Library Layout PAIRED
PROJECT COMPOSITION
Study Soil microbial communities from Everglades Agricultural Area, Florida, United States
Biosample Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep2
Analysis Projects Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep2
EAA2017 plots 3/5 metagenome combined assembly
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep2
Other Names (alias, synonyms, short names)
  
Sample Description
Soil microbial communities from Everglades Agricultural Area, Florida, United States; soil from rotation with Sugarcane-Sweetcorn-Rice-sugarcane  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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