PROJECT INFORMATION
GOLD Project ID
Gp0403809  
Project Name
Lucinid clam associated microbial communities from Wildcat Cove Preserve, Florida, USA - J1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Taxonomic and functional heterogeneity of the gill microbiome in Phacoides pectinatus
NCBI BioProject Accession PRJNA368737
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08364493
PI Supratim Mukherjee
Added By Supratim Mukherjee on 2019-04-18
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center Clemson University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications The ISME journal Taxonomic and functional heterogeneity of the gill microbiome in a symbiotic coastal mangrove lucinid species.

SRA Experiment
  
PROJECT COMPOSITION
Study Lucinid clam associated microbial communities from Wildcat Cove Preserve, Florida, USA
Biosample Lucinid clam associated microbial communities from Wildcat Cove Preserve, Florida, USA - J1
Analysis Projects Lucinid clam associated microbial communities from Wildcat Cove Preserve, Florida, USA - J1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Lucinid clam associated microbial communities from Wildcat Cove Preserve, Florida, USA - J1
Other Names (alias, synonyms, short names)
  
Sample Description
Lucinid clam associated microbial communities from Wildcat Cove Preserve, Florida, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mollusca  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Gills  
Specific Ecosystem
  

 

 

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