Studies
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56,329 |
|
Biosamples
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196,776 |
|
Sequencing Projects
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525,145 |
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Analysis Projects
|
385,404 |
| Organisms | 484,214 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0402044
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Project Name
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Actinoplanes sediminis DSM 100965
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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Source Sample ID
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| PI | Hans-Peter Klenk |
| Added By | JGI automated process on 2019-03-22 |
| Last Modified By | JGI automated process on 2023-03-07 |
| Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Sequencing of Actinobacteria genome as a plant growth promoter and producer of natural products and energy relevant enzymes
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
Restricted
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|
JGI Award DOI
|
10.46936/10.25585/60001044 |
| JGI Portal Download | Raw Sequence Data |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Sequencing the genomes of 1000 actinobacteria strains |
| Organism |
Actinoplanes sediminis DSM 100965 |
| Analysis Projects |
Actinoplanes sediminis DSM 100965 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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In progress |
| Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
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Finishing Goal
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Level 3: Improved-High-Quality Draft |
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio Sequel II |
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Library Method
(MIGS-28)
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PacBio Multiplexed 10kb, Tubes
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0511557 |
| Organism Name |
Actinoplanes sediminis DSM 100965
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
ACTINOMYCETOTA
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| Genus |
Actinoplanes
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| Genus Synonyms |
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| Species |
Actinoplanes sediminis
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSM 100965
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 100965
|
| Type Strain |
Yes
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1734445 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Actinomycetota
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| NCBI Class |
Actinomycetes
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| NCBI Order |
Micromonosporales
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| NCBI Family |
Micromonosporaceae
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| NCBI Genus |
Actinoplanes
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| NCBI Species |
Actinoplanes sediminis
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Sediment
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
KR347172 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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