PROJECT INFORMATION
GOLD Project ID
Gp0396273  
Project Name
Marine pelagic microbial communities from Tasman Sea - 102.100.100/21739  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metagenome from Australian marine benthic and pelagic environments
NCBI BioProject Accession PRJNA385736
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07483597
PI Andrew Bissett
Added By JGI automated process on 2019-02-04
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Commonwealth Scientific and Industrial Research Organisation (CSIRO) (Australia)
Collaborating Institute
  
Funding Agency
  
Project Description
Marine pelagic microbial communities from Tasman Sea  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX3079266  (Link to NCBI )
Experiment Title Marine_amplicon
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection PCR
Library Name 21739_16S_AT785
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX3079264  (Link to NCBI )
Experiment Title Marine_amplicon
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection PCR
Library Name 21739_18S_APDWL
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX3079265  (Link to NCBI )
Experiment Title Marine_amplicon
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection PCR
Library Name 21739_A16S_AT119
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX3079565  (Link to NCBI )
Experiment Title Marine_metagenomics
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection PCR
Library Name 102.100.100/21739
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX3498271  (Link to NCBI )
Experiment Title Marine_amplicon
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection PCR
Library Name 21739_16S_AT785
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX3498273  (Link to NCBI )
Experiment Title Marine_amplicon
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection PCR
Library Name 21739_A16S_AT119
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX3498274  (Link to NCBI )
Experiment Title Marine_amplicon
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection PCR
Library Name 21739_18S_APDWL
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Marine microbial communities from benthic and pelagic environments in Australia
Biosample Marine pelagic microbial communities from Tasman Sea - 102.100.100/21739
Analysis Projects Combined Assembly of marine microbial communities from pelagic environments in Australia
Marine pelagic microbial communities from Tasman Sea - 102.100.100/21739
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Marine pelagic microbial communities from Tasman Sea - 102.100.100/21739
Other Names (alias, synonyms, short names)
  
Sample Description
Marine pelagic microbial communities from Tasman Sea  
SAMPLE TAXONOMY
NCBI Taxonomy ID 408172
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Epipelagic  
Specific Ecosystem
  

 

 

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