PROJECT INFORMATION
GOLD Project ID
Gp0376786  
Project Name
Bergeyella cardium 1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 490389
NCBI BioProject Accession PRJNA490389
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10035131
PI
Added By JGI automated process on 2019-01-03
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center University of California, San Francisco (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Bergeyella cardium 1 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4671720  (Link to NCBI )
Experiment Title DNA-Seq of B. cardium: adult male blood isolate
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name bcardium_illumina
Library Layout PAIRED
Library Instrument NEXT_SEQ_550
 
SRA Experiment Id SRX4671721  (Link to NCBI )
Experiment Title DNA-Seq of B. cardium: adult male blood isolate
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name bcardium_nano
Library Layout SINGLE
Library Instrument MIN_ION
PROJECT COMPOSITION
Study Bergeyella cardium 1 genome sequencing
Organism Bergeyella cardium 1
Analysis Projects Bergeyella cardium 1
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Oxford Nanopore MinION
Illumina NextSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0492813
Organism Name
Bergeyella cardium 1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Bergeyella  
Genus Synonyms
  
Species
Bergeyella cardium  
Subspecies
  
Species Synonyms
  
Strain
1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1585976
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Bergeyella  
NCBI Species
Bergeyella cardium  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Circulatory system  
Ecosystem Subtype
Blood  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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