PROJECT INFORMATION
GOLD Project ID
Gp0376589  
Project Name
Bdellovibrio sp. SKB1291214  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Bdellovibrio sp. SKB1291214
NCBI BioProject Accession PRJNA383395
NCBI Locus Tag
B9G69  
NCBI BioSample Accession SAMN06763661
Source Sample ID
PI Unknown
Added By JGI automated process on 2019-01-03
Last Modified By
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Centro de Biotecnología Genómica (CBG) (Mexico)
Collaborating Institute
  
Funding Agency
  
Project Description
Bdellovibrio sp. SKB1291214 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Microbiologyopen: 5(6):992-1002 Isolation of Bdellovibrio sp. from soil samples in Mexico and their potential applications in control of pathogens.
PubMed: 27297185 DOI: 10.1002/mbo3.382
Other Publications
  
Ignored Publications
  
Unassigned Publications Microbiologyopen: 5(6):992-1002 Isolation of Bdellovibrio sp. from soil samples in Mexico and their potential applications in control of pathogens.
PubMed: 27297185 DOI: 10.1002/mbo3.382
SRA Experiment
  
PROJECT COMPOSITION
Study Bdellovibrio sp. SKB1291214 genome sequencing
Organism Bdellovibrio sp. SKB1291214
Analysis Projects Bdellovibrio sp. SKB1291214
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina NextSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
44.8  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0492621
Organism Name
Bdellovibrio sp. SKB1291214  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BDELLOVIBRIONOTA  
Genus
Bdellovibrio  
Genus Synonyms
  
Species
Bdellovibrio sp. SKB1291214  
Subspecies
  
Species Synonyms
  
Strain
SKB1291214  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1732569
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bdellovibrionota  
NCBI Class
Bdellovibrionia  
NCBI Order
Bdellovibrionales  
NCBI Family
Pseudobdellovibrionaceae  
NCBI Genus
Bdellovibrio  
NCBI Species
Bdellovibrio sp. SKB1291214  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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