PROJECT INFORMATION
GOLD Project ID
Gp0375397  
Project Name
Lawsonia intracellularis Fu/JPN  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 478479
NCBI BioProject Accession PRJNA478479
NCBI Locus Tag
  
NCBI BioSample Accession SAMD00128989
PI
Added By JGI automated process on 2019-01-03
Last Modified By Hema Katta on 2019-06-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center National Food Research Institute, National Agriculture and Food Research Organization (NARO)
Collaborating Institute
  
Funding Agency
  
Project Description
Lawsonia intracellularis Fu/JPN genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Microbiol Resour Announc Draft Genome Sequences of Lawsonia intracellularis Swine Strains Causing Proliferative Enteropathy in Japan.

Other Publications
  
SRA Experiment
 
SRA Experiment Id DRX133711  (Link to NCBI )
Experiment Title HiSeq X Ten paired end sequencing of SAMD00128989
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
PROJECT COMPOSITION
Study Lawsonia intracellularis Japanease strains, whole genome shotgun sequence
Organism Lawsonia intracellularis Fu/JPN
Analysis Projects Lawsonia intracellularis Fu/JPN
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0491506
Organism Name
Lawsonia intracellularis Fu/JPN  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Lawsonia  
Genus Synonyms
  
Species
Lawsonia intracellularis  
Subspecies
  
Species Synonyms
  
Strain
Fu/JPN  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 29546
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfovibrionales  
NCBI Family
Desulfovibrionaceae  
NCBI Genus
Lawsonia  
NCBI Species
Lawsonia intracellularis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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