PROJECT INFORMATION
GOLD Project ID
Gp0372338  
Project Name
Humibacter sp. BT305  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Humibacter sp. BT305
NCBI BioProject ID 482061
NCBI BioProject Accession PRJNA482061
NCBI Locus Tag
DVJ78  
NCBI BioSample Accession SAMN09694957
PI
Added By JGI automated process on 2018-12-21
Last Modified By Hema Katta on 2019-08-14
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Kyunghee University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Humibacter sp. BT305 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Microbiol Resour Announc BT305, Isolated from the Small Intestine of Castrated Beef Cattle.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5116785  (Link to NCBI )
Experiment Title Genome sequence of Humibacter aquilariae BT305
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BT305 Illumina forword raw
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
 
SRA Experiment Id SRX5116786  (Link to NCBI )
Experiment Title Genome sequence of Humibacter aquilariae BT305
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BT305 PacBio raw
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Humibacter sp. BT305 genome sequencing
Organism Humibacter sp. BT305
Analysis Projects Humibacter sp. BT305
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0488542
Organism Name
Humibacter sp. BT305  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Humibacter  
Genus Synonyms
  
Species
Humibacter sp. BT305  
Subspecies
  
Species Synonyms
  
Strain
BT305  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2282656
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Microbacteriaceae  
NCBI Genus
Humibacter  
NCBI Species
Humibacter sp. BT305  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?