PROJECT INFORMATION
GOLD Project ID
Gp0370120  
Project Name
Rathayibacter rathayi AY1D8  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 432233
NCBI BioProject Accession PRJNA432233
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08438777
PI
Added By JGI automated process on 2018-12-21
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center Oregon State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Rathayibacter rathayi AY1D8 genome sequencing  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3631464
Experiment Title Genome sequencing of Rathayibacter rathayi: strain AY1D8
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AY1D8
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
PROJECT COMPOSITION
Study A population study of Rathayibacter toxicus and related novel Rathayibacter species
Organism Rathayibacter rathayi AY1D8
Analysis Projects Rathayibacter rathayi AY1D8
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0486393
Organism Name
Rathayibacter rathayi AY1D8  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Rathayibacter  
Genus Synonyms
  
Species
Rathayibacter rathayi  
Subspecies
  
Species Synonyms
  
Strain
AY1D8  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 33887
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Microbacteriaceae  
NCBI Genus
Rathayibacter  
NCBI Species
Rathayibacter rathayi  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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