PROJECT INFORMATION
GOLD Project ID
Gp0364558  
Project Name
Caldicellulosiruptor changbaiensis CBS-Z  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 511150
NCBI BioProject Accession PRJNA511150
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10622644
PI Sara Blumer-Schuette
Added By Sara Blumer-Schuette on 2018-12-21
Last Modified By Hema Katta on 2019-12-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Unknown
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequence from the cellulolytic species, Caldicellulosiruptor changbaiensis  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Microbiol Resour Announc Complete Genome Sequence of Caldicellulosiruptor changbaiensis CBS-Z, an Extremely Thermophilic, Cellulolytic Bacterium Isolated from a Hot Spring in China.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5273980  (Link to NCBI )
Experiment Title Genome sequencing of Caldicellulosiruptor changbaiensis: Illumina
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name Calcha_Illumina
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX5274283  (Link to NCBI )
Experiment Title Genome sequencing of Caldicellulosiruptor changbaiensis: MinION
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Ccha_MinION
Library Layout SINGLE
Library Instrument MIN_ION
PROJECT COMPOSITION
Study Genome sequence of thermophilic plant biomass degrading bacteria from China
Organism Caldicellulosiruptor changbaiensis CBS-Z
Analysis Projects Caldicellulosiruptor changbaiensis CBS-Z
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
Hybrid assembly from Illumina HiSeq and Oxford Nanopore MinION  
Sequencing Technology (MIGS-29) Oxford Nanopore MinION
Library Method (MIGS-28)
Illumina 2x150bp and MinION 1D rapid genome sequencing  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0480896
Organism Name
Caldicellulosiruptor changbaiensis CBS-Z  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Caldicellulosiruptor  
Genus Synonyms
  
Species
Caldicellulosiruptor changbaiensis  
Subspecies
  
Species Synonyms
  
Strain
CBS-Z  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1222016
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Thermoanaerobacterales  
NCBI Family
Thermoanaerobacterales Family III. Incertae Sedis  
NCBI Genus
Caldicellulosiruptor  
NCBI Species
Caldicellulosiruptor changbaiensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Hot (42-90C)  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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