PROJECT INFORMATION
GOLD Project ID
Gp0356406  
Project Name
Metatranscriptome of Pinus sylvestris inoculated with Cenococcum geophilum 1.58 root tips from Switzerland - CengePine_Dtime2_R2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Pinus sylvestris inoculated with Cenococcum geophilum 1.58 root tips from Switzerland - CengePine_Dtime2_R2
NCBI BioProject Accession PRJNA567578
NCBI Locus Tag
F5B27  
NCBI BioSample Accession SAMN12796092
Source Sample ID
PI Francis M. Martin
Added By JGI automated process on 2018-12-13
Last Modified By JGI automated process on 2022-12-25
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Pinus sylvestris inoculated with Cenococcum geophilum 1.58 root tips from Switzerland; 14 days of drought  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001022
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX7582938  (Link to NCBI )
Experiment Title Cenococcum geophilum - Pine and Spruce Metatranscriptome
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name GHCNP
Library Layout PAIRED
PROJECT COMPOSITION
Study Mycorrhizal fungal microbial communities from various locations for deep transcriptomics studies
Biosample Pinus sylvestris inoculated with Cenococcum geophilum 1.58 root tips from Switzerland - CengePine_Dtime2_R2
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Low Input RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Pinus sylvestris inoculated with Cenococcum geophilum 1.58 root tips from Switzerland - CengePine_Dtime2_R2
Other Names (alias, synonyms, short names)
  
Sample Description
Pinus sylvestris inoculated with Cenococcum geophilum 1.58 root tips from Switzerland; 14 days of drought  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1118232
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?