PROJECT INFORMATION
GOLD Project ID
Gp0353392  
Project Name
Freshwater lake sediment microbial communities from Sudbury, Canada - 101  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Effects of organic matter manipulation on bacterial community diversity and function
NCBI BioProject ID 434888
NCBI BioProject Accession PRJEB18063
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA4559787
PI
Added By JGI automated process on 2018-12-04
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Cambridge (United Kingdom)
Collaborating Institute
  
Funding Agency
  
Project Description
Metagenome sequencing to study effects of organic matter manipulation on bacterial community diversity and function  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id ERX1812580  (Link to NCBI )
Experiment Title NextSeq 550 paired end sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name Shotgun_mesocosms
Library Layout PAIRED
Library Instrument NEXT_SEQ_550
PROJECT COMPOSITION
Study Freshwater lake sediment microbial communities from Sudbury, Canada
Biosample Freshwater lake sediment microbial communities from Sudbury, Canada - 101
Analysis Projects Freshwater lake sediment microbial communities from Sudbury, Canada - 101
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NextSeq 550
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater lake sediment microbial communities from Sudbury, Canada - 101
Other Names (alias, synonyms, short names)
  
Sample Description
Freshwater lake sediment microbial communities from Sudbury, Canada  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1647806
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lake  
Specific Ecosystem
Sediment  

 

 

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