Studies
|
56,334 |
|
Biosamples
|
196,986 |
|
Sequencing Projects
|
525,358 |
|
Analysis Projects
|
385,008 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0347875
|
|
Project Name
|
Fibrobacter succinogenes UWB7 Transcriptome - UWB7_SG_R2_C
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Fibrobacter succinogenes UWB7 Transcriptome - UWB7_SG_R2_C |
|
NCBI BioProject Accession
|
PRJNA568807 |
|
NCBI Locus Tag
|
|
|
NCBI BioSample Accession
|
SAMN12796367 |
|
Source Sample ID
|
|
| PI | Michelle O'Malley |
| Added By | JGI automated process on 2018-11-09 |
| Last Modified By | JGI automated process on 2022-12-25 |
| Project Comments |
|
|
Project Status
|
incomplete
|
|
Project Relevance
|
|
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Fibrobacter succinogenes UWB7 Transcriptome
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
RNA |
|
Sequencing Strategy
|
Transcriptome
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
Unrestricted
|
|
JGI Award DOI
|
10.46936/10.25585/60001061 |
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
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|
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Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Determining the genomic basis for interactions between gut fungi and methanogenic archaea |
| Organism |
Fibrobacter succinogenes UWB7 |
| Analysis Projects |
|
| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina NovaSeq |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
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|
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0471787 |
| Organism Name |
Fibrobacter succinogenes UWB7
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIBROBACTEROTA
|
| Genus |
Fibrobacter
|
| Genus Synonyms |
|
| Species |
Fibrobacter succinogenes
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
UWB7
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
833 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Fibrobacterota
|
| NCBI Class |
Fibrobacteria
|
| NCBI Order |
Fibrobacterales
|
| NCBI Family |
Fibrobacteraceae
|
| NCBI Genus |
Fibrobacter
|
| NCBI Species |
Fibrobacter succinogenes
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| EXPERIMENT | |
|---|---|
| Experimental Conditions |
|
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