PROJECT INFORMATION
GOLD Project ID
Gp0346731  
Project Name
Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean - 1383E  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession PRJNA341273
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06240272
PI Jerome P. Payet
Added By Jerome P. Payet on 2018-11-08
Last Modified By Galina Ovchinnikova on 2018-11-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center The Marine Biological Laboratory
Collaborating Institute
  
Funding Agency
  
Project Description
Marine sediment from ridge flank in North Pond, Atlantic Ocean  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX2505630  (Link to NCBI )
Experiment Title Shotgun metagenomic sequencing of gDNA from marine sediment
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name 1383E
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1000
PROJECT COMPOSITION
Study Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean
Biosample Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean - 1383E
Analysis Projects Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean - 1383E
Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean - 1383E re-assembly
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 1000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean - 1383E
Other Names (alias, synonyms, short names)
  
Sample Description
Marine sediment from ridge flank in North Pond, Atlantic Ocean  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Sediment  
Specific Ecosystem
  

 

 

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