PROJECT INFORMATION
GOLD Project ID
Gp0344950  
Project Name
Metatranscriptome of Lepidopterella palustris mycelium from greenhouse in Uitikon, Zurich, Switzerland - Leppa_cntrl_R3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Lepidopterella palustris mycelium from greenhouse in Uitikon, Zurich, Switzerland - Leppa_cntrl_R3
NCBI BioProject ID 535914
NCBI BioProject Accession PRJNA535914
NCBI Locus Tag
FBV36  
NCBI BioSample Accession SAMN11510530
PI Francis M. MARTIN
Added By JGI automated process on 2018-10-26
Last Modified By JGI automated process on 2019-06-18
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Lepidopterella palustris control mycelium after 60 days  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Mycorrhizal fungal microbial communities from various locations for deep transcriptomics studies
Biosample Lepidopterella palustris mycelium from greenhouse in Uitikon, Zurich, Switzerland - Leppa_cntrl_R3
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Low Input RNASeq w/PolyA Selection, Tubes; Illumina RNASeq w/PolyA Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Lepidopterella palustris mycelium from greenhouse in Uitikon, Zurich, Switzerland - Leppa_cntrl_R3
Other Names (alias, synonyms, short names)
  
Sample Description
Lepidopterella palustris control mycelium after 60 days  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fungi  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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