PROJECT INFORMATION
GOLD Project ID
Gp0341108  
Project Name
Exophiala placitae JF2 08-2F Transcriptome - CrustyRNA  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Exophiala placitae JF2 08-2F Transcriptome - CrustyRNA
NCBI BioProject ID 519167
NCBI BioProject Accession PRJNA519167
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10864714
PI Steven Harris
Added By JGI automated process on 2018-10-19
Last Modified By JGI automated process on 2019-06-18
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Exophiala placitae JF2 08-2F Transcriptome. Cells grown in MN and YPD broth  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5335932
Experiment Title Exophiala placitae JF2 08-2F Transcriptome
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection RT-PCR
Library Name COZWW
Library Layout PAIRED
PROJECT COMPOSITION
Study Understanding fungal interaction networks in biological soil crusts
Organism Exophiala placitae JF2 08-2F
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
50  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0373355
Organism Name
Exophiala placitae JF2 08-2F  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Exophiala  
Genus Synonyms
  
Species
Exophiala placitae  
Subspecies
  
Species Synonyms
  
Strain
JF2 08-2F  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 467982
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Eurotiomycetes  
NCBI Order
Chaetothyriales  
NCBI Family
Herpotrichiellaceae  
NCBI Genus
Exophiala  
NCBI Species
Exophiala placitae  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Sand  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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