PROJECT INFORMATION | |
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GOLD Project ID
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Gp0334053
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Project Name
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Metatranscriptome of Populus candicans 'Aurora' detached leaves inoculated with Melampsora medusae f. sp. deltoidae from Quebec, Canada - MmdJ15B
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Metatranscriptome of Populus candicans 'Aurora' detached leaves inoculated with Melampsora medusae f. sp. deltoidae from Quebec, Canada - MmdJ15B |
NCBI BioProject ID
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570168 |
NCBI BioProject Accession
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PRJNA570168 |
NCBI Locus Tag
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F5S99
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NCBI BioSample Accession
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SAMN12814446 |
PI | Richard Hamelin |
Added By |
JGI automated process
on 2018-10-11 |
Last Modified By |
JGI automated process
on 2019-09-22 |
Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Metatranscriptome of detached leaves of Populus candicans 'Aurora' inoculated with Melampsora medusae f. sp. deltoidae; 15 dpi (days post infection)
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Is JGI Project |
Yes
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Biome |
Nucleic Acid
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RNA |
Sequencing Strategy
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Metatranscriptome
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EXTERNAL PROJECT LINKS | |
JGI Portal Download | Raw Sequence Data |
Project Information
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Database
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Genome Publications
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Other Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Genome and transcriptome sequencing of fungal pathogens from poplar and pine trees |
Biosample |
Populus candicans 'Aurora' detached leaves inoculated with Melampsora medusae f. sp. deltoidae from Quebec, Canada - MmdJ15B |
Analysis Projects |
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Number of Analysis Projects |
0 |
Number of DAPs |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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In progress |
Sequencing Quality (MIGS-31) |
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Finishing Goal
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq |
Library Method
(MIGS-28)
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Illumina RNASeq w/PolyA Selection, Tubes
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Populus candicans 'Aurora' detached leaves inoculated with Melampsora medusae f. sp. deltoidae from Quebec, Canada - MmdJ15B |
Other Names (alias, synonyms, short names) |
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Sample Description |
Detached leaves of Populus candicans 'Aurora' inoculated with Melampsora medusae f. sp. deltoidae; 15 dpi (days post infection)
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
1297885 |
GOLD CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Plants
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Ecosystem Type |
Phylloplane
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Ecosystem Subtype |
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Specific Ecosystem |
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