PROJECT INFORMATION
GOLD Project ID
Gp0334053  
Project Name
Metatranscriptome of Populus candicans 'Aurora' detached leaves inoculated with Melampsora medusae f. sp. deltoidae from Quebec, Canada - MmdJ15B  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Populus candicans 'Aurora' detached leaves inoculated with Melampsora medusae f. sp. deltoidae from Quebec, Canada - MmdJ15B
NCBI BioProject ID 570168
NCBI BioProject Accession PRJNA570168
NCBI Locus Tag
F5S99  
NCBI BioSample Accession SAMN12814446
PI Richard Hamelin
Added By JGI automated process on 2018-10-11
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of detached leaves of Populus candicans 'Aurora' inoculated with Melampsora medusae f. sp. deltoidae; 15 dpi (days post infection)  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome and transcriptome sequencing of fungal pathogens from poplar and pine trees
Biosample Populus candicans 'Aurora' detached leaves inoculated with Melampsora medusae f. sp. deltoidae from Quebec, Canada - MmdJ15B
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Populus candicans 'Aurora' detached leaves inoculated with Melampsora medusae f. sp. deltoidae from Quebec, Canada - MmdJ15B
Other Names (alias, synonyms, short names)
  
Sample Description
Detached leaves of Populus candicans 'Aurora' inoculated with Melampsora medusae f. sp. deltoidae; 15 dpi (days post infection)  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1297885
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Phyllosphere  
Ecosystem Subtype
Leaf  
Specific Ecosystem
  

 

 

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