PROJECT INFORMATION
GOLD Project ID
Gp0332979  
Project Name
Metatranscriptome of Fagus sylvatica and Lactarius subdulcis mycorrhiza eukaryotic community from Champenoux Beech tree forest in Martinvelle, Grand Est, France - post bud break R4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Fagus sylvatica and Lactarius subdulcis mycorrhiza eukaryotic community from Champenoux Beech tree forest in Martinvelle, Grand Est, France - post bud break R4
NCBI BioProject ID 502238
NCBI BioProject Accession PRJNA502238
NCBI Locus Tag
EDQ15  
NCBI BioSample Accession SAMN10350521
PI Francis M. Martin
Added By JGI automated process on 2018-10-04
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Fagus sylvatica and Lactarius subdulcis mycorrhiza eukaryotic community from Champenoux Beech tree forest in Martinvelle, Grand Est, France  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5087139  (Link to NCBI )
Experiment Title Lactarius subdulcis - Fagus sylvatica Metatranscriptome
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name CHZCZ
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Mycorrhizal fungal microbial communities from various locations for deep transcriptomics studies
Biosample Fagus sylvatica and Lactarius subdulcis mycorrhiza eukaryotic community from Champenoux Beech tree forest in Martinvelle, Grand Est, France - post bud break R4
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input RNASeq w/PolyA Selection, Tubes; Illumina RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Fagus sylvatica and Lactarius subdulcis mycorrhiza eukaryotic community from Champenoux Beech tree forest in Martinvelle, Grand Est, France - post bud break R4
Other Names (alias, synonyms, short names)
  
Sample Description
Fagus sylvatica and Lactarius subdulcis mycorrhiza eukaryotic community from Champenoux Beech tree forest in Martinvelle, Grand Est, France  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1118232
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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