PROJECT INFORMATION
GOLD Project ID
Gp0330652  
Project Name
Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4
NCBI BioProject Accession PRJNA647752
NCBI Locus Tag
H1R91  
NCBI BioSample Accession SAMN15601797
Source Sample ID
PI Paul Dijkstra
Added By JGI automated process on 2018-09-27
Last Modified By JGI automated process on 2022-09-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm incubated with glucose addition, 24 hours after addition  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000955
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX8834022  (Link to NCBI )
Experiment Title C24R4 metaT
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name GUYZB
Library Layout PAIRED
 
SRA Experiment Id SRX8834021  (Link to NCBI )
Experiment Title C24R4 metaT
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name GHNZO
Library Layout PAIRED
PROJECT COMPOSITION
Study Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States
Biosample Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4
Analysis Projects Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4 (Metagenome Metatranscriptome)
Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4 (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina NovaSeq S4
Library Method (MIGS-28)
Production RnD, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4
Other Names (alias, synonyms, short names)
  
Sample Description
Soil microbial communities from West Virginia University Organic Research Farm incubated with glucose addition, 24 hours after addition  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Agricultural land  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
  

 

 

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