PROJECT INFORMATION | |||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0330652
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Project Name
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Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4 | ||||||||||||||||||||||||||||||||
NCBI BioProject Accession
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PRJNA647752 |
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NCBI Locus Tag
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H1R91
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NCBI BioSample Accession
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SAMN15601797 |
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Source Sample ID
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PI | Paul Dijkstra | ||||||||||||||||||||||||||||||||
Added By | JGI automated process on 2018-09-27 | ||||||||||||||||||||||||||||||||
Last Modified By | JGI automated process on 2022-09-04 | ||||||||||||||||||||||||||||||||
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm incubated with glucose addition, 24 hours after addition
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Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||||||||||||||||
Specimen
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Biome |
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Nucleic Acid
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RNA |
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Sequencing Strategy
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Metatranscriptome
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EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||
JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60000955 |
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JGI Portal Download | Raw Sequence Data | ||||||||||||||||||||||||||||||||
Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||
Study |
Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States |
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Biosample |
Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4 |
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Analysis Projects |
Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4 (Metagenome Metatranscriptome) Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4 (Metagenome Metatranscriptome Expression - Self) |
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Number of Analysis Projects (AP) |
2 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq Illumina NovaSeq S4 |
Library Method
(MIGS-28)
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Production RnD, Plates
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4 |
Other Names (alias, synonyms, short names) |
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Sample Description |
Soil microbial communities from West Virginia University Organic Research Farm incubated with glucose addition, 24 hours after addition
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
410658 |
GOLD CLASSIFICATION | |
Ecosystem |
Environmental
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Ecosystem Category |
Terrestrial
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Ecosystem Type |
Soil
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Ecosystem Subtype |
Agricultural land
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Specific Ecosystem |
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EXPERIMENT | |
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Experimental Conditions |
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