Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0326233
|
|
Project Name
|
E. coli phage CEV1
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name |
|
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NCBI BioProject Accession
|
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NCBI Locus Tag
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NCBI BioSample Accession
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|
|
Source Sample ID
|
|
| PI | Vivek Mutalik |
| Added By | Vivek Mutalik on 2018-08-30 |
| Last Modified By | |
| Project Comments |
|
|
Project Status
|
incomplete
|
|
Project Relevance
|
|
|
Sequencing Center
|
QB3 Vincent J. Coates Genomics Sequencing Laboratory
(USA)
|
|
Collaborating Institute
|
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Funding Agency
|
|
|
Project Description
|
Phage sequence for confirming the sample and for use in phage-host interaction studies
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Phages from various sources |
| Organism |
E. coli phage CEV1 |
| Analysis Projects |
|
| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
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Single Cell Lysis Approach
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|
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Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 4000 |
|
Library Method
(MIGS-28)
|
Illumina HiSeq 4000 (2x75 bp)
|
|
Library Layout
|
|
|
Library Screening Method
|
|
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Number Of Reads
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Read Size
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|
Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0456699 |
| Organism Name |
E. coli phage CEV1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
VIRUS
|
| Phylogeny |
UNCLASSIFIED-VIRUS
|
| Genus |
|
| Genus Synonyms |
|
| Species |
E. coli phage CEV1
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
CEV1
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
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| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
10239 |
| NCBI Superkingdom |
Viruses
|
| NCBI Kingdom |
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| NCBI Phylum |
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| NCBI Class |
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| NCBI Order |
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| NCBI Family |
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| NCBI Genus |
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| NCBI Species |
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| Viral Group |
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| Viral Subgroup |
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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