PROJECT INFORMATION
GOLD Project ID
Gp0325906  
Project Name
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5
NCBI BioProject Accession PRJNA518689
NCBI Locus Tag
EVR59  
NCBI BioSample Accession SAMN10864070
Source Sample ID
PI Steven W. Singer
Added By JGI automated process on 2018-08-24
Last Modified By JGI automated process on 2022-09-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000909
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX5661387  (Link to NCBI )
Experiment Title SM_Day14_5 metagenome
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name CWAYC
Library Layout PAIRED
PROJECT COMPOSITION
Study Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States
Biosample Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5
Analysis Projects Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5
P4+WT+SM metagenomes combined assembly
SM metagenomes combined assembly
Number of Analysis Projects (AP) 3
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5
Other Names (alias, synonyms, short names)
  
Sample Description
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States  
SAMPLE TAXONOMY
NCBI Taxonomy ID 662107
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Bioreactor  
Ecosystem Type
SSF (Solid state fermentation)  
Ecosystem Subtype
Aerobic  
Specific Ecosystem
Biomass  

 

 

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