PROJECT INFORMATION | |||||||||||||||||
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GOLD Project ID
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Gp0325906
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Project Name
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Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5 | ||||||||||||||||
NCBI BioProject Accession
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PRJNA518689 |
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NCBI Locus Tag
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EVR59
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NCBI BioSample Accession
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SAMN10864070 |
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Source Sample ID
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PI | Steven W. Singer | ||||||||||||||||
Added By | JGI automated process on 2018-08-24 | ||||||||||||||||
Last Modified By | JGI automated process on 2022-09-04 | ||||||||||||||||
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States
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Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||
PROJECT TYPE | |||||||||||||||||
Specimen
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Biome |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Metagenome
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EXTERNAL PROJECT LINKS | |||||||||||||||||
JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60000909 |
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JGI Portal Download | Raw Sequence Data | ||||||||||||||||
Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||
Study |
Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States |
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Biosample |
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5 |
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Analysis Projects |
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5 P4+WT+SM metagenomes combined assembly SM metagenomes combined assembly |
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Number of Analysis Projects (AP) |
3 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal
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Level 1: Standard Draft |
Contamination Screening Input
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DNA Amplification Method
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Sorting Technology
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5 |
Other Names (alias, synonyms, short names) |
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Sample Description |
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
662107 |
GOLD CLASSIFICATION | |
Ecosystem |
Engineered
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Ecosystem Category |
Bioreactor
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Ecosystem Type |
SSF (Solid state fermentation)
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Ecosystem Subtype |
Aerobic
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Specific Ecosystem |
Biomass
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