PROJECT INFORMATION
GOLD Project ID
Gp0325892  
Project Name
Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep3
NCBI BioProject ID 518676
NCBI BioProject Accession PRJNA518676
NCBI Locus Tag
EVR44  
NCBI BioSample Accession SAMN10864082
PI Steven W. Singer
Added By JGI automated process on 2018-08-24
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5661192  (Link to NCBI )
Experiment Title P4_Day56_Rep3 metagenome
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name CWAXP
Library Layout PAIRED
PROJECT COMPOSITION
Study Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States
Biosample Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep3
Analysis Projects Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep3
P4+WT+SM metagenomes combined assembly
P4 metagenomes combined assembly
Number of Analysis Projects (AP) 3
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep3
Other Names (alias, synonyms, short names)
  
Sample Description
Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1306859
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab enrichment  
Ecosystem Type
Defined media  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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