PROJECT INFORMATION
GOLD Project ID
Gp0325882  
Project Name
Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
NCBI BioProject Accession PRJNA518672
NCBI Locus Tag
EVR40  
NCBI BioSample Accession SAMN10864089
Source Sample ID
PI Colin Averill
Added By JGI automated process on 2018-08-24
Last Modified By JGI automated process on 2022-09-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001122
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX5351296  (Link to NCBI )
Experiment Title YN3 metagenome
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name CWAHG
Library Layout PAIRED
PROJECT COMPOSITION
Study Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States
Biosample Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Analysis Projects Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Suillus-Soil Metagenome Co-Assembly
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Other Names (alias, synonyms, short names)
  
Sample Description
Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Artificial ecosystem  
Ecosystem Type
Soil microcosm  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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