PROJECT INFORMATION
GOLD Project ID
Gp0325116  
Project Name
Microcella alkaliphila AC4r  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Microcella alkaliphila AC4r
NCBI BioProject Accession PRJNA519253
NCBI Locus Tag
EV140  
NCBI BioSample Accession SAMN10864719
PI William Whitman
Added By JGI automated process on 2018-08-15
Last Modified By JGI automated process on 2022-03-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing as part of the Genomic Encyclopedia of Type Strains, Phase III project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001401
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications Standards in genomic sciences Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains.

Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX5659469  (Link to NCBI )
Experiment Title Microcella alkaliphila AC4r
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CUNAH
Library Layout PAIRED
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the genomes of soil and plant-associated and newly described type strains
Organism Microcella alkaliphila AC4r
Analysis Projects Microcella alkaliphila AC4r
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0456146
Organism Name
Microcella alkaliphila AC4r  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Microcella  
Genus Synonyms
  
Species
Microcella alkaliphila  
Subspecies
  
Species Synonyms
  
Strain
AC4r  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
10.1601/ex.10867  
Exemplar Name
Microcella alkaliphila  
Taxon DOI
10.1601/tx.10867  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 279828
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinomycetia  
NCBI Order
Micrococcales  
NCBI Family
Microbacteriaceae  
NCBI Genus
Microcella  
NCBI Species
Microcella alkaliphila  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
  
Salinity
  
pH
9.5  
Cell Diameter
0.3 μm  
Cell Length
3–4 μm  
Color
Yellow  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquifer
Alkaline water
Groundwater
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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