PROJECT INFORMATION
GOLD Project ID
Gp0324213  
Project Name
Blastococcus sp. TF02A-30  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Blastococcus sp. TF02A-30 Genome sequencing and assembly
NCBI BioProject ID 478237
NCBI BioProject Accession PRJNA478237
NCBI Locus Tag
DQ241  
NCBI BioSample Accession SAMN09502900
PI Louis Tisa
Added By Louis Tisa on 2018-07-24
Last Modified By
Project Comments
Actinobacteria isolated from stone ruins in the Tiruchirappalli Stone Fort, Tamil Nadu, India. Stone composed of quartz. Part of a study of the microbial community found on stone surfaces.  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of New Hampshire (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Actinobacteria isolated from stone ruins in the Tiruchirappalli Stone Fort, Tamil Nadu, India. Stone composed of quartz. Part of a study of the microbial community found on stone surfaces.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4378926  (Link to NCBI )
Experiment Title Genome sequence Blastococcus TF02A-30
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TF02A-30
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Blastococcus sp. TF02A-30 Genome Sequencing
Organism Blastococcus sp. TF02A-30
Analysis Projects Blastococcus sp. TF02A-30
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
Nextra library  
Number Of Reads
15,562,207  
Read Size
250  
Vector
  
GC Percent
74  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0455567
Organism Name
Blastococcus sp. TF02A-30  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Blastococcus  
Genus Synonyms
  
Species
Blastococcus sp. TF02A-30  
Subspecies
  
Species Synonyms
  
Strain
TF02A-30  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2250580
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Geodermatophilales  
NCBI Family
Geodermatophilaceae  
NCBI Genus
Blastococcus  
NCBI Species
Blastococcus sp. TF02A-30  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Rock-dwelling (endoliths)  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Rock
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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