PROJECT INFORMATION
GOLD Project ID
Gp0323430  
Project Name
Cucurbita maxima Rimu  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cucurbita maxima Rimu genome sequencing
NCBI BioProject ID 418295
NCBI BioProject Accession PRJNA418295
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06886671
PI
Added By JGI automated process on 2018-07-12
Last Modified By JGI automated process on 2018-07-16
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center National Center for Biotechnology Information
Collaborating Institute
  
Funding Agency
  
Project Description
Cucurbita maxima Rimu genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2787161
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_300a
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787160
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_200d
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787154
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_200a
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787165
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_1k
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787164
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_500b
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787163
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_500a
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787162
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_300b
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787158
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_15k
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787157
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_10k
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787156
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_5k
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787155
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_200b
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787166
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_3k
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2787159
Experiment Title Evolution of paleotetraploid Cucurbita genomes
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Maxima_200c
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Cucurbita maxima Rimu genome sequencing
Organism Cucurbita maxima Rimu
Analysis Projects Cucurbita maxima Rimu
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0455104
Organism Name
Cucurbita maxima Rimu  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Cucurbita  
Genus Synonyms
  
Species
Cucurbita maxima  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
Rimu  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 3661
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Streptophyta  
NCBI Class
  
NCBI Order
Cucurbitales  
NCBI Family
Cucurbitaceae  
NCBI Genus
Cucurbita  
NCBI Species
Cucurbita maxima  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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