Studies
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47,510 |
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Biosamples
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122,151 |
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Sequencing Projects
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392,155 |
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Analysis Projects
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311,845 |
| Organisms | 403,926 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0317025
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Project Name
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Alsobacter soli SH9
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Alsobacter soli SH9 genome sequencing |
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NCBI BioProject ID
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437366 |
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NCBI BioProject Accession
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PRJNA437366 |
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NCBI Locus Tag
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SLNSH
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NCBI BioSample Accession
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SAMN08660935 |
| PI | |
| Added By |
JGI automated process
on 2018-05-24 |
| Last Modified By |
Supratim Mukherjee
on 2020-12-23 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Shanghai Academy of Agricultural Sciences
(China)
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Collaborating Institute
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Funding Agency
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Project Description
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The genus Alsobacter within the order Rhizobiales in the class Alphaproteobacteria. One type strain has been published so far from the genus Alsobacter. The 16S rDNA sequence of SH9 is 98.51% identical to that of Alsobacter metallidurans NBRC 107718T, which indicates that strain SH9 is a new species of Alsobacter. Comparative genomic sequence analysis between strain SH9 and Alsobacter metallidurans NBRC 107718T will provide more evidence to prove that SH9 is a new species of Alsobacter .
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Alsobacter sp. SH9 genome sequencing |
| Organism |
Alsobacter soli SH9 |
| Analysis Projects |
Alsobacter soli SH9 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0452598 |
| Organism Name |
Alsobacter soli SH9
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-ALPHA
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| Genus |
Alsobacter
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| Genus Synonyms |
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| Species |
Alsobacter soli
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| Subspecies |
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| Species Synonyms |
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| Strain |
SH9
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
2109933 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Alphaproteobacteria
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| NCBI Order |
Rhizobiales
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| NCBI Family |
Alsobacteraceae
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| NCBI Genus |
Alsobacter
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| NCBI Species |
Alsobacter soli
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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