PROJECT INFORMATION | |
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GOLD Project ID
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Gp0316965
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Project Name
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Methanonatronarchaeum thermophilum AMET1
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Methanonatronarchaeum thermophilum AMET1 |
NCBI BioProject ID
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356895 |
NCBI BioProject Accession
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PRJNA356895 |
NCBI Locus Tag
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AMET1
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NCBI BioSample Accession
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SAMN05770049 |
PI | |
Added By |
JGI automated process
on 2018-05-24 |
Last Modified By |
Supratim Mukherjee
on 2019-01-24 |
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
Sequencing Center
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National Center for Biotechnology Information
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Collaborating Institute
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Funding Agency
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Project Description
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Methanogenic archaea are major players in the global carbon cycle. The phylum Euryarchaeota includes diverse groups of methanogens that are interspersed with non-methanogenic branches in the evolutionary tree. So far methanogens inhabiting hypersaline environments have been identified only within the order Methanosarcinales. These halophilic methanogens employ the bacterial type of osmoprotection based on the "salt-out" strategy. We report the discovery of a novel deep lineage of extremophilic methanogens that inhabit hypersaline lakes and can be considered as "methanogenic haloarchaea", and present a comprehensive analysis of two nearly complete genomes from this group. Within the phylum Euryarchaeota, these isolates form a novel, class-level lineage that is most closely related to the class Halobacteria and for which we propose the name "Methanonatronarchaea". Their extreme halophily and the absence of organic osmolytes indicate that "Methanonatronarchaea" employ the "salt-in" osmotic strategy. Their growth requires FeS or sediments from hypersaline lakes. The novel methanogens belong to heterotrophic methyl reducers that utilize C1-methylated compounds as electron acceptors and formate or hydrogen as electron donors. The genomes contain an incomplete (and apparently inactivated) set of genes encoding the upper branch of methyl group oxidation to CO2, the membrane-bound heterosulfide reductase and cytochromes. The presence of these genes clearly differentiates this novel group from all known methyl reducing methanogens. The discovery of extremely halophilic, methyl-reducing methanogens related to haloarchaea sheds new light on the origin of methanogenesis and shows that the ability of methanogens to live in salt-saturating conditions is not limited to the classical methylotrophic pathway.
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
Project Information
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Database
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Genome Publications
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Other Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Methanonatronarchaeum thermophilum strain:AMET1 |
Organism |
Methanonatronarchaeum thermophilum AMET1 |
Analysis Projects |
Methanonatronarchaeum thermophilum AMET1 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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ORGANISM NAME | |
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GOLD Organism ID |
Go0452544 |
Organism Name |
Methanonatronarchaeum thermophilum AMET1
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
ARCHAEAL
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Phylogeny |
EURYARCHAEOTA
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Genus |
Methanonatronarchaeum
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Genus Synonyms |
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Species |
Methanonatronarchaeum thermophilum
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Subspecies |
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Species Synonyms |
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Strain |
AMET1
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
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Type Strain |
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Exemplar DOI |
10.1601/ex.31838
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Exemplar Name |
Methanonatronarchaeum thermophilum
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Taxon DOI |
10.1601/tx.31838
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
1927129 |
NCBI Superkingdom |
Archaea
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NCBI Kingdom |
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NCBI Phylum |
Euryarchaeota
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NCBI Class |
Methanonatronarchaeia
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NCBI Order |
Methanonatronarchaeales
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NCBI Family |
Methanonatronarchaeaceae
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NCBI Genus |
Methanonatronarchaeum
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NCBI Species |
Methanonatronarchaeum thermophilum
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ISOLATION CLASSIFICATION | |
Ecosystem |
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Specific Ecosystem |
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
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Biotic Relationships |
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Symbiotic Relationship |
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Symbiont Name |
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Cell Arrangements |
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Metabolisms |
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Phenotypes |
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Energy Sources |
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