PROJECT INFORMATION
GOLD Project ID
Gp0316499  
Project Name
Estrella lausannensis CRIB-30  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Estrella lausannensis CRIB-30 genome sequencing
NCBI BioProject ID 278318
NCBI BioProject Accession PRJEB7018
NCBI Locus Tag
ELAC  
NCBI BioSample Accession SAMEA3174674
PI
Added By JGI automated process on 2018-05-24
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center CHUV-UNIL
Collaborating Institute
  
Funding Agency
  
Project Description
This entry reports the results of Master students that specifically sequenced and annotation te genome of Estrella lausannensis CRIB 30, an obligate intracellular bacterium related to Chlamydia. Bacterial DNA was sequenced using Illumina GaIIx machine with half of a paired-end 36 bp run. The reads obtained were assembled using different softwares. A few gaps were solved by PCR, Sanger sequencing and reassembly. The genome was annotated with GenDB. Students focalized on the manual curation of the annotation of particular biosynthetic pathways to evaluate the ability of E. lausannensis to synthesize essential building blocks such as nucleotides, amino acids and co-factors. The complete sequence of the plasmid was solved and the gene content of the plasmid was given a particular attention as well.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Estrella lausannensis CRIB-30 genome sequencing
Organism Estrella lausannensis CRIB-30
Analysis Projects Estrella lausannensis CRIB-30
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0452078
Organism Name
Estrella lausannensis CRIB-30  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLAMYDIAE  
Genus
Estrella  
Genus Synonyms
  
Species
Estrella lausannensis  
Subspecies
  
Species Synonyms
  
Strain
CRIB-30  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 483423
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chlamydiae  
NCBI Class
Chlamydiia  
NCBI Order
Parachlamydiales  
NCBI Family
Criblamydiaceae  
NCBI Genus
Estrella  
NCBI Species
Estrella lausannensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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