PROJECT INFORMATION
GOLD Project ID
Gp0315459  
Project Name
Megasphaera sp. An286  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Megasphaera sp. An286 genome sequencing
NCBI BioProject ID 377666
NCBI BioProject Accession PRJNA377666
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06473708
PI
Added By JGI automated process on 2018-05-24
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Veterinary Research Institute
Collaborating Institute
  
Funding Agency
  
Project Description
Megasphaera sp. An286 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2641115
Experiment Title WGS on Megasphaera_elsdenii_An286
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name An286
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Whole genome sequencing of chicken gut anaerobes
Organism Megasphaera sp. An286
Analysis Projects Megasphaera sp. An286
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NextSeq 500
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0451040
Organism Name
Megasphaera sp. An286  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Megasphaera  
Genus Synonyms
  
Species
Megasphaera sp. An286  
Subspecies
  
Species Synonyms
  
Strain
An286  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
Anaerobe  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1965622
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Veillonellales  
NCBI Family
Veillonellaceae  
NCBI Genus
Megasphaera  
NCBI Species
Megasphaera sp. An286  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Birds  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Ceca  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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