PROJECT INFORMATION
GOLD Project ID
Gp0306283  
Project Name
Calothrix rhizosoleniae SC01  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Calothrix rhizosoleniae SC01
NCBI BioProject ID 376308
NCBI BioProject Accession PRJEB19506
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA94537168
PI Rachel Foster
Added By Rachel Foster on 2018-04-03
Last Modified By Supratim Mukherjee on 2018-06-01
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Sequence of an open ocean symbiont of diatom Chaetoceros compressus  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Nature communications Genomic deletions disrupt nitrogen metabolism pathways of a cyanobacterial diatom symbiont.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study DDA symbiont diversity
Organism Calothrix rhizosoleniae SC01
Analysis Projects Calothrix rhizosoleniae SC01
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal Level 5: Non-contiguous Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0411745
Organism Name
Calothrix rhizosoleniae SC01  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Calothrix  
Genus Synonyms
  
Species
Calothrix rhizosoleniae  
Subspecies
  
Species Synonyms
  
Strain
SC01  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 439482
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Nostocales  
NCBI Family
Calotrichaceae  
NCBI Genus
Calothrix  
NCBI Species
Calothrix rhizosoleniae  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Epipelagic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Filament-shaped  
Motility
  
Sporulation
  
Temperature Range
Undefined  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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