PROJECT INFORMATION
GOLD Project ID
Gp0305944  
Project Name
Rhodoluna lacicola MWH-Ta8 transcriptome - TB4 - Ta8_15m_dark  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Rhodoluna lacicola MWH-Ta8 transcriptome - TB4 - Ta8_15m_dark
NCBI BioProject ID 455010
NCBI BioProject Accession PRJNA455010
NCBI Locus Tag
  
NCBI BioSample Accession SAMN09064250
PI Julia Maresca
Added By JGI automated process on 2018-03-24
Last Modified By JGI automated process on 2018-10-01
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Rhodoluna lacicola MWH-Ta8 transcriptome; Cells harvested 15m into the dark period  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4399369  (Link to NCBI )
Experiment Title Rhodoluna lacicola MWH-Ta8 transcriptomics
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection other
Library Name CNCGB
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Light-induced gene expression in cosmopolitan freshwater Actinobacteria
Organism Rhodoluna lacicola MWH-Ta8
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009793
Organism Name
Rhodoluna lacicola MWH-Ta8  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Rhodoluna  
Genus Synonyms
  
Species
Rhodoluna lacicola  
Subspecies
  
Species Synonyms
  
Strain
MWH-Ta8  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 23834  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.14703  
Exemplar Name
Rhodoluna lacicola  
Taxon DOI
10.1601/tx.14703  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 529884
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Microbacteriaceae  
NCBI Genus
Rhodoluna  
NCBI Species
Rhodoluna lacicola  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Curved-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Red  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Lake
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganoheterotroph

 

 

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