PROJECT INFORMATION
GOLD Project ID
Gp0305503  
Project Name
Salinispora arenicola CNY244 transcriptome - Y244_J863_HM_15h_2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Salinispora arenicola CNY244 transcriptome - Y244_J863_HM_15h_2
NCBI BioProject Accession PRJNA694710
NCBI Locus Tag
  
NCBI BioSample Accession SAMN17573596
Source Sample ID
PI Paul r. Jensen
Added By JGI automated process on 2018-03-24
Last Modified By JGI automated process on 2021-11-05
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Salinispora arenicola CNY244 transcriptome; Cells grown in A1 media  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000647
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX10044877  (Link to NCBI )
Experiment Title Salinispora arenicola CNY244 transcriptomics
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection other
Library Name BUPSG
Library Layout SINGLE
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Transcriptomics of Salinispora species for secondary metabolites
Organism Salinispora arenicola CNY244
Analysis Projects Salinispora arenicola CNY244 transcriptome - Y244_J863_HM_15h_2
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0046590
Organism Name
Salinispora arenicola CNY244  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Salinispora  
Genus Synonyms
  
Species
Salinispora arenicola  
Subspecies
  
Species Synonyms
  
Strain
CNY244  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 168697
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinomycetota  
NCBI Class
Actinomycetes  
NCBI Order
Micromonosporales  
NCBI Family
Micromonosporaceae  
NCBI Genus
Salinispora  
NCBI Species
Salinispora arenicola  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
EXPERIMENT
Experimental Conditions
  

 

 

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