PROJECT INFORMATION
GOLD Project ID
Gp0304259  
Project Name
Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhodanobacter bacterium JGI PFNR15_D11  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhodanobacter bacterium JGI PFNR15_D11
NCBI BioProject Accession PRJNA470417
NCBI Locus Tag
DHS59  
NCBI BioSample Accession SAMN09199904
PI Carolin Frank
Added By JGI automated process on 2018-03-08
Last Modified By JGI automated process on 2022-09-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome - Single Particle Sort  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000936
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Above-ground endophytic microbial communities from plants in different locations in the United States
Biosample Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhodanobacter bacterium JGI PFNR15_D11
Analysis Projects Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhodanobacter bacterium JGI PFNR15_D11
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NextSeq-HO
Library Method (MIGS-28)
Illumina Nextera with Size Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhodanobacter bacterium JGI PFNR15_D11
Other Names (alias, synonyms, short names)
  
Sample Description
Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1297858
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Phyllosphere  
Ecosystem Subtype
Phylloplane/Leaf  
Specific Ecosystem
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?