PROJECT INFORMATION
GOLD Project ID
Gp0302354  
Project Name
Gibbsiella quercinecans FRB97  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Gibbsiella quercinecans FRB97 genome sequencing
NCBI BioProject ID 308223
NCBI BioProject Accession PRJNA308223
NCBI Locus Tag
  
NCBI BioSample Accession SAMN04388492
PI
Added By JGI automated process on 2018-03-01
Last Modified By JGI automated process on 2018-12-07
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Bangor University
Collaborating Institute
  
Funding Agency
  
Project Description
Gibbsiella quercinecans FRB97 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1970660  (Link to NCBI )
Experiment Title Whole genome sequece of Gibbsiella quercinecans FRB97: Sample G_quercinecans_FRB97_pacbio
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GQ13_f: G_quercinecans_FRB97_pacbio
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX1970659  (Link to NCBI )
Experiment Title Whole genome sequece of Gibbsiella quercinecans FRB97: Sample G_quercinecans_FRB97_pacbio
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GQ13_e: G_quercinecans_FRB97_pacbio
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX1970656  (Link to NCBI )
Experiment Title Whole genome sequece of Gibbsiella quercinecans FRB97: Sample G_quercinecans_FRB97_pacbio
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GQ13_b: G_quercinecans_FRB97_pacbio
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX1970655  (Link to NCBI )
Experiment Title Whole genome sequece of Gibbsiella quercinecans FRB97: Sample G_quercinecans_FRB97_pacbio
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GQ13_a: G_quercinecans_FRB97_pacbio
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX1970658  (Link to NCBI )
Experiment Title Whole genome sequece of Gibbsiella quercinecans FRB97: Sample G_quercinecans_FRB97_pacbio
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GQ13_d: G_quercinecans_FRB97_pacbio
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX1970657  (Link to NCBI )
Experiment Title Whole genome sequece of Gibbsiella quercinecans FRB97: Sample G_quercinecans_FRB97_pacbio
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GQ13_c: G_quercinecans_FRB97_pacbio
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Gibbsiella quercinecans FRB97 Genome sequencing
Organism Gibbsiella quercinecans FRB97
Analysis Projects Gibbsiella quercinecans FRB97
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0046595
Organism Name
Gibbsiella quercinecans FRB97  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Gibbsiella  
Genus Synonyms
  
Species
Gibbsiella quercinecans  
Subspecies
  
Species Synonyms
  
Strain
FRB97  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.21350  
Exemplar Name
Gibbsiella quercinecans  
Taxon DOI
10.1601/tx.21350  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
No  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 929813
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Gibbsiella  
NCBI Species
Gibbsiella quercinecans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID GU562337
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Wood
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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