PROJECT INFORMATION
GOLD Project ID
Gp0302235  
Project Name
Loigolactobacillus coryniformis torquens DSM 20004  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Loigolactobacillus coryniformis torquens DSM 20004 genome sequencing
NCBI BioProject Accession PRJNA348627
NCBI Locus Tag
LC20004  
NCBI BioSample Accession SAMN05912986
PI
Added By JGI automated process on 2018-03-01
Last Modified By Supratim Mukherjee on 2020-10-28
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Kyungpook National University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Loigolactobacillus coryniformis torquens DSM 20004 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Lactobacillus coryniformis torquens DSM 20004 genome sequencing
Organism Loigolactobacillus coryniformis torquens DSM 20004
Analysis Projects Loigolactobacillus coryniformis torquens DSM 20004
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0123261
Organism Name
Loigolactobacillus coryniformis torquens DSM 20004  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Loigolactobacillus  
Genus Synonyms
  
Species
Loigolactobacillus coryniformis  
Subspecies
torquens  
Species Synonyms
  
Strain
DSM 20004  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 20004  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5354  
Exemplar Name
Lactobacillus coryniformis torquens  
Taxon DOI
10.1601/tx.5354  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1423822
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Loigolactobacillus  
NCBI Species
Loigolactobacillus coryniformis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Air  
Ecosystem Type
Indoor Air  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Air
Cattle
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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