PROJECT INFORMATION
GOLD Project ID
Gp0290506  
Project Name
Thiohalophilus thiocyanatoxydans DSM 16326  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Thiohalophilus thiocyanatoxydans DSM 16326
NCBI BioProject ID 500307
NCBI BioProject Accession PRJNA500307
NCBI Locus Tag
EDC23  
NCBI BioSample Accession SAMN10363265
PI Markus Göker
Added By JGI automated process on 2017-12-21
Last Modified By JGI automated process on 2019-09-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing as part of The One Thousand Microbial Genomes Phase 4 (KMG IV) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5202827  (Link to NCBI )
Experiment Title Thiohalophilus thiocyanatoxydans DSM 16326
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CTOTG
Library Layout PAIRED
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing the most valuable type-strain genomes for metagenomic binning, comparative biology and taxonomic classification
Organism Thiohalophilus thiocyanatoxydans DSM 16326
Analysis Projects Thiohalophilus thiocyanatoxydans DSM 16326
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0030783
Organism Name
Thiohalophilus thiocyanatoxydans DSM 16326  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Thiohalophilus  
Genus Synonyms
  
Species
Thiohalophilus thiocyanatoxydans  
Subspecies
  
Species Synonyms
  
Strain
DSM 16326  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 16326  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.11335  
Exemplar Name
Thiohalophilus thiocyanatoxydans  
Taxon DOI
10.1601/tx.11335  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 381308
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Chromatiales  
NCBI Family
Thioalkalispiraceae  
NCBI Genus
Thiohalophilus  
NCBI Species
Thiohalophilus thiocyanatoxydans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Hypersaline  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID DQ469584
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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