PROJECT INFORMATION
GOLD Project ID
Gp0249146  
Project Name
Megasphaera elsdenii NCIMB 702410 transcriptomics - 1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Megasphaera elsdenii NCIMB 702410 transcriptomics - 1
NCBI BioProject ID 457661
NCBI BioProject Accession PRJNA457661
NCBI Locus Tag
  
NCBI BioSample Accession SAMN09066100
PI Adam Guss
Added By JGI automated process on 2017-09-29
Last Modified By JGI automated process on 2019-06-18
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Megasphaera elsdenii NCIMB 702410 transcriptomics - growth conditions: CTFUD media, pH 6.5, anaerobic, 37C  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4387530
Experiment Title Megasphaera elsdenii NCIMB 702410 transcriptomics
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection other
Library Name BXGCX
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genome and transcriptome sequencing of evolved Clostridium thermocellum mutants and other biofuel strains
Organism Megasphaera elsdenii NCIMB 702410
Analysis Projects Megasphaera elsdenii NCIMB 702410 transcriptomics - 1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
53  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0118496
Organism Name
Megasphaera elsdenii NCIMB 702410  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Megasphaera  
Genus Synonyms
  
Species
Megasphaera elsdenii  
Subspecies
  
Species Synonyms
  
Strain
NCIMB 702410  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NCIMB 702410  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 907
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Veillonellales  
NCBI Family
Veillonellaceae  
NCBI Genus
Megasphaera  
NCBI Species
Megasphaera elsdenii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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