PROJECT INFORMATION
GOLD Project ID
Gp0241860  
Project Name
Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-7-1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cochliobolus sativus ND4008 - Brachypodium distachyon Gene Expression Profiling - 4008-7-1
NCBI BioProject ID 408463
NCBI BioProject Accession PRJNA408463
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07685277
PI Gerrit H. Kema
Added By JGI automated process on 2017-09-19
Last Modified By JGI automated process on 2019-04-29
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Deciphering the Interactome of Dothideomycete-bioenergy crops. Transcriptome of Cochliobolus sativus ND4008 innoculated into Brachypodium distachyon  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3884643
Experiment Title Cochliobolus sativus - Brachypodium distachyon Gene Expression Profiling
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection RT-PCR
Library Name OSYC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Deciphering the Interactome of Dothideomycete-bioenergy crops
Organism Cochliobolus sativus ND4008
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0385409
Organism Name
Cochliobolus sativus ND4008  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Cochliobolus  
Genus Synonyms
  
Species
Cochliobolus sativus  
Subspecies
  
Species Synonyms
  
Strain
ND4008  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 45130
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Dothideomycetes  
NCBI Order
Pleosporales  
NCBI Family
Pleosporaceae  
NCBI Genus
Bipolaris  
NCBI Species
Bipolaris sorokiniana  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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