PROJECT INFORMATION
GOLD Project ID
Gp0239182  
Project Name
Caldicellulosiruptor obsidiansis OB47 methylation detection - OB47  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Caldicellulosiruptor obsidiansis OB47 methylation detection - OB47
NCBI BioProject ID 410715
NCBI BioProject Accession PRJNA410715
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07685900
PI Adam Guss
Added By JGI automated process on 2017-09-19
Last Modified By JGI automated process on 2019-05-05
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Caldicellulosiruptor obsidiansis OB47 methylation detection  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Methylation  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study PacBio sequencing to determine microbial DNA methylation
Organism Caldicellulosiruptor obsidiansis OB47
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006244
Organism Name
Caldicellulosiruptor obsidiansis OB47  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Caldicellulosiruptor  
Genus Synonyms
  
Species
Caldicellulosiruptor obsidiansis  
Subspecies
  
Species Synonyms
  
Strain
OB47  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC BAA-2073  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.23558  
Exemplar Name
Caldicellulosiruptor obsidiansis  
Taxon DOI
10.1601/tx.23558  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 608506
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Thermoanaerobacterales  
NCBI Family
Thermoanaerobacterales Family III. Incertae Sedis  
NCBI Genus
Caldicellulosiruptor  
NCBI Species
Caldicellulosiruptor obsidiansis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
Hyperthermophile  
Salinity
  
pH
7  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases None
Known Habitats Hot spring
Metabolisms Nitrogen producer
Cellulose degrader
Biomass degrader
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?