PROJECT INFORMATION
GOLD Project ID
Gp0238895  
Project Name
Crocosphaera subtropica ATCC 51142  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Crocosphaera subtropica ATCC 51142
NCBI BioProject ID 410579
NCBI BioProject Accession PRJNA410579
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07687556
PI Jonathan Zehr
Added By JGI automated process on 2017-09-19
Last Modified By Supratim Mukherjee on 2019-07-12
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
DNA Methylation in Crocosphaera sp. ATCC 51142 wild type strain  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Methylation  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Marine cyanobacterial communities from the University of California, Santa Cruz, USA, analyzing cyanobacterial DNA methylation
Organism Crocosphaera subtropica ATCC 51142
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0385402
Organism Name
Crocosphaera subtropica ATCC 51142  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Crocosphaera  
Genus Synonyms
  
Species
Crocosphaera subtropica  
Subspecies
  
Species Synonyms
  
Strain
ATCC 51142  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 51142  
Type Strain
  
Exemplar DOI
10.1601/ex.639  
Exemplar Name
Cyanothece sp.  
Taxon DOI
10.1601/tx.639  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 43989
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Chroococcales  
NCBI Family
Aphanothecaceae  
NCBI Genus
Crocosphaera  
NCBI Species
Crocosphaera subtropica  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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